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THE
FIELDS INSTITUTE FOR RESEARCH IN MATHEMATICAL SCIENCES
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Workshop on Statistical Issues in Biomarker and Drug
Co-development
November 7-8, 2014
Fields
Institute, 222 College Street, Toronto
Organizing Committee:
Judy-Anne
Chapman, Keyue Ding, Bingshu Chen,
Mike McIsaac (Queen's University);
Lei Sun (University of Toronto);
Lehana Thabane, Greg Pond (McMaster University);
Wenqing He (University of Western Ontario);
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Robert
Platt, Celia Greenwood (McGill University);
Karen Kopciuk (University of Calgary);
Yan Yuan (University of Alberta);
Steven McKinney (British Columbia Cancer Agency);
Qian (Michelle) Zhou (Simon Fraser University)
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OVERVIEW
Recent advances in molecular biology promise biomarkers that may establish
diagnosis, indicate prognosis, predict therapeutic response, and provide insights
into disease etiology. Advances in our understanding of cancer biology, in
molecularly targeted therapies, and pharmacogenomics make it possible for
personalized/precision medicine, while presenting new challenges for the design
and analysis of clinical trials for new targeted agents. Tissue and blood
(DNA, plasma, serum) samples are now frequently collected with clinical trials;
urine and saliva are collected less frequently. Sometimes collections are
sequential during therapy or follow-up. We are beginning to understand the
challenges arising from different biomarker assessment modalities, and the
importance of laboratory quality assurance measures. We have seen paradigm
shifts in monitoring and utilizing toxicity data, away from collection solely
for the purpose of investigational drug safety, to certain toxicities as surrogate
indicators of drug efficacy, or as arising from pharmacogenetics. These new
toxicity indicators imply a different approach to designing and delivering
targeted therapy. Recent initiatives to increase clinical and scientific research
lead to a concomitant need for increased statistical research beginning with
designs for collecting high dimensional complex data, handling missing data,
possibly longitudinally.
The one and a half day (Bio)Statistics Workshop in biomarker and drug co-development
aims to educate researchers about emerging developments in statistical designs
and analyses for clinical trials and translational research, as well as to
identify open statistical problems for which attendees will consider organizing
research proposals. International experts will provide an introduction to
biomarker data and an overview of current design, analysis, and reporting
principles with issues for research. Workshop participants will solidify their
knowledge about the current state of the field(s); have opportunities to network,
to identify knowledge gaps, and to propose research initiatives that will
be the focus of a full grant application which will globally enhance and expedite
biomarker research.
A poster session and Round Table discussions will encourage knowledge exchange.
Speakers:
Soren Bentzen (University of Maryland),
Judy-Anne Chapman (Queen's University)
Gary Clark (Array Biopharma US),
Richard Cook (University of Waterloo)
Keyue Ding (Queen's University)
Susan Hilsenbeck (Baylor College of Medicine US),
Antje Hoering (Cancer Research and Biostatistics, US)
Krishna R (Rani) Kalari (Mayo Clinic, US),
Michael LeBlanc (SWOG Statistical Center, US)
Longhai Li (University of Saskatchewan)
Lisa McShane (NCI US),
Olli Saarela (McGill University)
Richard Simon (NCI US)
Program
Friday, November
7th:
Overview Tutorial Lectures on Biomarker Data |
12:00 - 5:30 pm |
Registration on-site |
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12:30 - 1:15 pm |
Refreshments |
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Topic
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Potential Speaker
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1:15-1:30 pm |
Welcome
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TBA |
1:30-2:00 pm |
Biomarker Data 101 (Slides)
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Judy-Anne
W Chapman, (recently retired from)
NCIC Clinical Trials Queen's University Group
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2:00-2:30 pm |
Introduction to Microarray Data (Slides)
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Longhai Li, University of Saskatchewan
longhai<at>math.usask.ca
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2:30-3:30 pm |
Reporting and evaluation of studies of biomarkers
and omics-based predictors: the REMARK guidelines and the NCI Omics Checklist (Slides) |
Lisa
McShane, NCI, US
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3:30-4:00 pm |
Tea Break |
4:00-5:00 pm |
Extensions of BRB-Array Tools |
Richard
Simon, NCI, US
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5:00-5:30 pm |
Reception |
5:30-7:30 pm |
Networking Dinner
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Saturday, November
8th
Poster presentation throughout day - special category for students with
SSC level support for travel. |
8:00 am-3:30 pm |
Registration on-site
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8:00-8:30 am |
Continental Breakfast |
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Topic
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Potential Speaker
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8:30-9:00 am |
Randomized Phase III Clinical
Trial Designs for Targeted Therapies (Slides)
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Antje
Hoering, CRAB, US |
9:00-9:30 am |
Statistical Methods in Early Drug Development
of Targeted Therapies: A Day in the Life of an Industry Statistician (Slides)
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Gary
Clark, Array Biopharma, US
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9:30-10:00 am |
Prognostic and Predictive Markers: What's
the Difference and why should I care? (Slides)
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Susan
Hilsenbeck, Baylor College of Medicne |
10:00-10:30 am |
Coffee Break |
10:30-11:00 am |
Some experience with biomarker Driven cancer
clinical trials (Slides) |
Michael LeBlanc, Group Statistician, SWOG Statistical
Center &
Fred Hutchinson, Cancer Research Center
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11:00-11:30 am |
TBA |
Soren
Bentzen,
University School of Medicine |
11:30am-12:00 pm |
Pharmacogenomics of Aromotase Inhibitors
with musculoskeletal adverse events and bone fractures phenotypes (Slides)
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Kishna
R.(Rani) Kalari, Mayo Clinic
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12:00-1:00 pm |
Lunch on site and poster
viewing |
1:00-1:30 pm |
Case-base sampling for fitting and validating
prognostic models (Slides) |
Olli
Saarela, University of Toronto |
1:30-2:00 pm |
Predictive gene signature selection for
Chemotherapy in early stage non-small cell lung cancer patients (Slides) |
Keyue Ding, NCIC
Clinical Trials Group, Queen's University
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2:00-2:30 pm |
Variable selection and the assessment of
predictive accuracy with interval-censored responses (Slides)
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Richard
Cook, University of Waterloo
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2:30-3:00 pm |
Tea Break (Poster Viewing) |
3:00-4:30 pm |
Networking Group Discussions Towards
Full CANSSI grant proposal topics (TBA)
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Round Tables around Thematic Areas: Discussions
led by Workshop Leadership |
Final List of Workshop Participants
Full Name |
University/Affiliation |
Bentzen, Søren M. |
University of Maryland School of Medicine |
Blais, Mathieu |
the Lunendeld-Tanenbaum Research Institute |
Bramhecha, Yogesh |
McGill University |
Bull, Shelley |
Lunenfeld-Tanenbaum Research Institute |
Caetano, Samantha-Jo |
McMaster University |
Camacho, Fernando |
DAMOS Inc |
Chapman, Judy-Anne |
Queen's University |
Chen, Bingshu |
Queen's University |
Clark, Gary |
Array BioPharma Inc. |
Cook, Richard J. |
University of Waterloo |
Ding, Keyue |
Queen's University |
Ennis, Marguerite |
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Espin Garcia, Oswaldo |
University of Toronto |
Gambaro, Karen |
McGill |
Ghaffari, Abdi |
Queen's University, Cancer Research Institute |
Gill, Bethany |
University of Waterloo |
Greenwood, Celia |
Lady Davis Institute |
Hilsenbeck, Susan G. |
Lester and Sue Smith Breast Cancer Center |
Hoering, Antje |
Cancer Research and Biostatistics (CRAB) |
Huszti, Ella |
UHN |
Jiang, Haiyan |
University of Toronto |
Kalari, Krishna |
Mayo Clinic |
Kong, Qin |
University of Waterloo |
Kopciuk, Karen |
AHS/U Calgary |
Laforte, Veronique |
McGill University |
Lafreniere-Roula, Myriam |
Dalla Lana School of Public Health |
Le, Lisa |
Princess Margaret Cancer Centre, University Health Network |
LeBlanc, Michael |
Fred Hutcinson Cancer Research Center |
Lee, En-shiun |
University of Waterloo |
Li, Longhai |
University of Saskatchewan |
Li, Suzanne |
UHN |
Li, Terry |
Queen's University |
Lim, Lily |
iHPME |
Lokku, Armend |
University of Toronto |
Lou, Wendy |
University of Toronto |
Lu, Yan |
ICES |
Luo, Bin |
University of Western Ontario |
Maganti, Manjula |
Princess Margaret Cancer Care |
McGregor, Kevin |
McGill University |
McIsaac, Michael |
Queen's University |
McKinney, Steven |
British Columbia Cancer Research Centre |
McShane, Lisa M. |
National Institute of Health |
Nadon, Robert |
McGill University |
Oweida, Ayman |
McGill University |
Parpia, Sameer |
McMaster University |
Parulekar, Wendy |
Queen's University |
Platt, Robert |
McGill University |
Pond, Gregory |
McMaster University |
Saarela, Olli |
University of Toronto |
Sabelnykova, Veronica |
Ontario Institute for Cancer Research |
Simon, Richard |
National Institute of Health |
Song, Yuyao |
University Health Network |
Su, Jie |
Princess Margaret Cancer Centre |
Sung, Yubin |
University of Guelph |
Talhouk, Aline |
University of British Columbia |
Vakaljan, Stephanie |
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Xu, Changchang |
Lunenfeld-Tanenbaum Research institute |
Xu, Wei |
Princess Margaret Cancer Centre |
Yao, Zhan |
ICES |
Yuan, Yan |
University of Alberta |
Zhao, Bangxin |
Western University |
Zhou, Qian |
Simon Fraser University |
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